I had water hammering at my old house, and it burst the hot water hose to the clothes washer twice, in the middle of the night. Lucky I was home both times to turn the valves off. (The hammering weakened the hoses, which popped at some random time.) I built air chambers above both the hot and cold valves that fed the washing machine, and never had a problem after that. The pipes also didn't rattle any more when the washer cut off. I got 1" copper pipe, and made the chambers reach from the valves to near the ceiling. Just a couple sweat reducers and a tee.
I would suggest he builds one of these from either copper or PVC pipe and place it somewhere along the line that feeds the irrigation system.
My guess is that the long pipes on the irrigation system make a resonator, and a pressure wave is reflecting back and forth on that pipe. These pressure waves are hitting the pressure regulator and making it blip little bursts of pressure into the home branch of the pipes. After the first valve cycles, it may be that the home lines have been bumped up in pressure enough that no more blips get through the regulator.
Jon