Finished my patriotic AD5X enclosure remix over the weekend and figured I'd share how I got clean color separation, since it took me a couple of failed plates to figure out the workflow. First thing I did was go through every part in the slicer and physically drag them onto separate plates by color. Don't just assign colors and hope for the best, actually group them. Once each plate only had one color on it, I set the filament per plate instead of per object, and purge waste basicly disappeared. A couple of gotchas worth knowing before you start. Check your hardware against the printed parts before you commit to a full print run. I mocked everything up dry with the screws from my kit and found a few were too short to bite properly, so instead of ordering new ones I just scaled one spacer down along its length and reprinted it. Took ten minutes and the whole assembly pulled tight. That kind of on-the-fly fix is half the reason I even bother printing these mods myself.
One last tip if you go multi-color: lay everything out on the bench grouped by color before you slice anything. You'll spot duplicate parts and mirrored pieces you'd otherwise print twice, and it makes assembly way faster because you're not hunting through a pile for the right bracket. Anyway, mine's running now and the neighbors allready think it's some kind of Dutch tribute, so I'm printing stars to slap around the top edge and settle the debate.