There are a few problems with this. The most important being just how do you control the depth? The nature of the tool used to adjust Pro38 delay's is what makes that system usable. You would be better off laying in a stock of RDK+ delay kits and swapping to get the desired length.
Then if you believe the article in Extreme Rocketry (claiming that the precise radial position of the igniter changes the delay time), drilling a hole on the motor side will have no effect at all. But that theory has holes you can drive a Saturn V through.